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Efficient space and time multicomparison of genomes
dc.contributor.author | Messeguer Peypoch, Xavier |
dc.contributor.author | Huerta, Mario |
dc.contributor.other | Universitat Politècnica de Catalunya. Departament de Ciències de la Computació |
dc.date.accessioned | 2016-11-29T12:10:12Z |
dc.date.available | 2016-11-29T12:10:12Z |
dc.date.issued | 2003-02 |
dc.identifier.citation | Messeguer, X., Huerta, M. "Efficient space and time multicomparison of genomes". 2003. |
dc.identifier.uri | http://hdl.handle.net/2117/97409 |
dc.description.abstract | The comparison of genomes is based on substrings, called MUMs, that appear only once in each genome and are maximal. The set of MUMs determines the skeleton from which a global comparison can be established. The search of MUMs is handled with Suffix trees which are those trees that store all suffixes of a given sequence. The searching algorithm builds a generalized suffixtree for each pair and finds the MUMs between them. |
dc.format.extent | 10 p. |
dc.language.iso | eng |
dc.relation.ispartofseries | LSI-02-64-R |
dc.subject | Àrees temàtiques de la UPC::Informàtica |
dc.subject.other | Genomes comparison |
dc.subject.other | MuMs |
dc.subject.other | Suffix trees |
dc.subject.other | Pattern matching |
dc.title | Efficient space and time multicomparison of genomes |
dc.type | External research report |
dc.rights.access | Open Access |
local.identifier.drac | 1898427 |
dc.description.version | Postprint (published version) |
local.citation.author | Messeguer, X.; Huerta, M. |
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