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dc.contributor.authorAraujo Granda, Pablo Alejandro
dc.contributor.authorGras Moreu, Anna Maria
dc.contributor.authorGinovart Gisbert, Marta
dc.contributor.otherUniversitat Politècnica de Catalunya. Departament d'Enginyeria Agroalimentària i Biotecnologia
dc.contributor.otherUniversitat Politècnica de Catalunya. Departament de Matemàtica Aplicada III
dc.date.accessioned2014-09-17T16:39:36Z
dc.date.available2014-09-17T16:39:36Z
dc.date.created2013
dc.date.issued2013
dc.identifier.citationAraujo, P.; Gras, A.; Ginovart, M. An individual-based model for the study of Paracoccus denitrificans, a denitrifying bacterium. A: International Conference on Environmental, Industrial and Applied Microbiology. "Book of Abstracts : BioMicroWorld 2013". 2013, p. 1-5.
dc.identifier.urihttp://hdl.handle.net/2117/24089
dc.description.abstractIn order to understand some environmental factors that control N2O production by microbes in agricultural soils, a virtual bioreactor for Paracoccus denitrificans was designed using a culture medium containing succinate as a carbon source, ammonium as nitrogen source and various electron acceptors such as oxygen, nitrate, nitrite, nitrogen monoxide and dinitrogen oxide. INDISIM was the core individual-based model for the bacterial behavior and five metabolic pathways were selected and translated into balanced chemical equations using the Thermodynamic Electron Equivalents Model. This thermodynamic approach is the basis of the individual metabolism that this microbe carries out for its cellular maintenance and production of new biomass. The preliminary simulation results achieved with the implementation of this model in NetLogo showed that it is possible to investigate the behavior of this denitrifying bacterium and some of the outputs regarding the temporal evolutions of the diverse substrates are consistent with previous experimental data carried out with it.
dc.format.extent5 p.
dc.language.isoeng
dc.subjectÀrees temàtiques de la UPC::Enginyeria agroalimentària::Agricultura::Reg
dc.subject.lcshDenitrification
dc.subject.otherDenitrification
dc.subject.otherParacoccus denitrificans
dc.subject.otherIndividual-based model
dc.subject.otherThermodymanic Electron Equivalents Model
dc.subject.otherNetLogo
dc.titleAn individual-based model for the study of Paracoccus denitrificans, a denitrifying bacterium
dc.typeConference lecture
dc.subject.lemacAigua -- Abastament
dc.contributor.groupUniversitat Politècnica de Catalunya. SC-SIMBIO - Sistemes complexos. Simulació discreta de materials i de sistemes biològics
dc.relation.publisherversionhttp://cataleg.upc.edu/record=b1442297~S1*cat
dc.rights.accessOpen Access
local.identifier.drac12824812
dc.description.versionPostprint (published version)
local.citation.authorAraujo, P.; Gras, A.; Ginovart, M.
local.citation.contributorInternational Conference on Environmental, Industrial and Applied Microbiology
local.citation.publicationNameBook of Abstracts : BioMicroWorld 2013
local.citation.startingPage1
local.citation.endingPage5


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