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dc.contributor.authorTozzi, Caterina
dc.contributor.authorWalani, Nikhil
dc.contributor.authorArroyo Balaguer, Marino
dc.contributor.otherUniversitat Politècnica de Catalunya. Doctorat en Matemàtica Aplicada
dc.contributor.otherUniversitat Politècnica de Catalunya. Departament d'Enginyeria Civil i Ambiental
dc.date.accessioned2019-10-11T07:33:51Z
dc.date.available2019-10-11T07:33:51Z
dc.date.issued2019-09-04
dc.identifier.citationTozzi, C.; Walani, N.; Arroyo, M. Out-of-equilibrium mechanochemistry and self-organization of fluid membranes interacting with curved proteins. "New journal of physics", 4 Setembre 2019, vol. 21, p. 1-23.
dc.identifier.issn1367-2630
dc.identifier.urihttp://hdl.handle.net/2117/169771
dc.description.abstractThe function of biological membranes is controlled by the interaction of the fluid lipid bilayer with various proteins, some of which induce or react to curvature. These proteins can preferentially bind or diffuse towards curved regions of the membrane, induce or stabilize membrane curvature and sequester membrane area into protein-rich curved domains. The resulting tight interplay between mechanics and chemistry is thought to control organelle morphogenesis and dynamics, including traffic, membrane mechanotransduction, or membrane area regulation and tension buffering. Despite all these processes are fundamentally dynamical, previous work has largely focused on equilibrium and a self-consistent theoretical treatment of the dynamics of curvature sensing and generation has been lacking. Here, we develop a general theoretical and computational framework based on a nonlinear Onsager’s formalism of irreversible thermodynamics for the dynamics of curved proteins and membranes. We develop variants of the model, one of which accounts for membrane curving by asymmetric crowding of bulky off-membrane protein domains. As illustrated by a selection of test cases, the resulting governing equations and numerical simulations provide a foundation to understand the dynamics of curvature sensing, curvature generation, and more generally membrane curvature mechano-chemistry.
dc.format.extent23 p.
dc.language.isoeng
dc.subjectÀrees temàtiques de la UPC::Matemàtiques i estadística::Anàlisi numèrica
dc.subjectÀrees temàtiques de la UPC::Matemàtiques i estadística::Matemàtica aplicada a les ciències
dc.subject.lcshNumerical analysis--Simulation methods
dc.subject.lcshBiology
dc.subject.otherlipid bilayers
dc.subject.othermembrane proteins
dc.subject.othercurvature sensing
dc.subject.othercurvature generation
dc.titleOut-of-equilibrium mechanochemistry and self-organization of fluid membranes interacting with curved proteins
dc.typeArticle
dc.subject.lemacAnàlisi numèrica
dc.subject.lemacBiologia
dc.contributor.groupUniversitat Politècnica de Catalunya. LACÀN - Mètodes Numèrics en Ciències Aplicades i Enginyeria
dc.identifier.doi10.1088/1367-2630/ab3ad6
dc.description.peerreviewedPeer Reviewed
dc.subject.amsClassificació AMS::65 Numerical analysis::65C Probabilistic methods, simulation and stochastic differential equations
dc.subject.amsClassificació AMS::92 Biology and other natural sciences::92C Physiological, cellular and medical topics
dc.relation.publisherversionhttps://iopscience.iop.org/article/10.1088/1367-2630/ab3ad6
dc.rights.accessOpen Access
local.identifier.drac25846090
dc.description.versionPostprint (author's final draft)
dc.relation.projectidinfo:eu-repo/grantAgreement/EC/H2020/681434/EU/Epithelial cell sheets as engineering materials: mechanics, resilience and malleability/EpiMech
local.citation.authorTozzi, C.; Walani, N.; Arroyo, M.
local.citation.publicationNameNew journal of physics
local.citation.volume21
local.citation.startingPage1
local.citation.endingPage23


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