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dc.contributor.authorSubirana Torrent, Juan A.
dc.contributor.authorAnokian, Ezequiel
dc.contributor.otherUniversitat Politècnica de Catalunya. Departament d'Enginyeria Química
dc.date.accessioned2011-09-19T13:31:46Z
dc.date.available2011-09-19T13:31:46Z
dc.date.created2011-03-01
dc.date.issued2011-03-01
dc.identifier.citationSubirana, J.; Anokian, E. Visualization of sequence and structural features of genomes and chromosome fragments. Application to CpG islands, Alu sequences and whole genomes. "Gene", 01 Març 2011, vol. 473, núm. 2, p. 76-81.
dc.identifier.issn0378-1119
dc.identifier.urihttp://hdl.handle.net/2117/13244
dc.description.abstractA very simple new program is presented (G-SQUARES). It is useful in order to visualize the composition and basic structural features of whole genomes and selected chromosome regions. The frequency of all dimer and tetramer sequences is reported. Overall structural features are calculated, such as the tendency for alternation. A direct visual comparison among different sequences is easily available. Furthermore, the features which are visualized indicate further studies which should be carried out. Examples are presented on Alu sequences, CpG islands, whole eukaryotic and bacterial genomes.
dc.format.extent6 p.
dc.language.isoeng
dc.subjectÀrees temàtiques de la UPC::Enginyeria química::Biotecnologia
dc.subject.lcshGenomics
dc.subject.lcshDNA -- Structure -- Computer simulation
dc.subject.lcshG-SQUARES
dc.titleVisualization of sequence and structural features of genomes and chromosome fragments. Application to CpG islands, Alu sequences and whole genomes
dc.typeArticle
dc.subject.lemacGenòmica -- Processament de dades
dc.subject.lemacADN -- Estructura -- Mètodes de simulació
dc.contributor.groupUniversitat Politècnica de Catalunya. MACROM - Cristal·lografia, Estructura i Funció de Macromolècules Biològiques
dc.identifier.doi10.1016/j.gene.2010.11.008
dc.description.peerreviewedPeer Reviewed
dc.rights.accessRestricted access - publisher's policy
drac.iddocument5472190
dc.description.versionPostprint (published version)
upcommons.citation.authorSubirana, J.; Anokian, E.
upcommons.citation.publishedtrue
upcommons.citation.publicationNameGene
upcommons.citation.volume473
upcommons.citation.number2
upcommons.citation.startingPage76
upcommons.citation.endingPage81


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