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dc.contributor.authorLu, Huixia
dc.contributor.authorMartí Rabassa, Jordi
dc.contributor.otherUniversitat Politècnica de Catalunya. Departament de Física
dc.date.accessioned2019-01-08T17:39:32Z
dc.date.available2019-01-08T17:39:32Z
dc.date.issued2018-10-04
dc.identifier.citationLu, H., Marti, J. Binding free energies of small-molecules in phospholipid membranes: aminoacids, serotonin and melatonin. "Chemical physics letters", 4 Octubre 2018, vol. 712, p. 190-195.
dc.identifier.issn0009-2614
dc.identifier.urihttp://hdl.handle.net/2117/126323
dc.description.abstractFree energy barriers associated to the binding of small-molecules at phospholipid zwitterionic membranes have been computed at 323 K for a variety of species: tryptophan, histidine, tyrosine, serotonin and melatonin bound to a model membrane formed by di-palmitoyl-phosphatidyl-choline lipids inside aqueous sodium chloride solution. We have computed the radial distribution functions of all species for a variety of membrane and water related sites and extracted potentials of mean force through the reversible work theorem. In all cases but histidine, the molecular probes are able to either be fully solvated by water or be embedded into the interface of the membrane. Our results indicate that binding of all species to water corresponds to free energy barriers of heights between 0.2 and 1.75 kcal/mol. Free energy barriers of association of small-molecules to lipid chains range between 0.6 and 3.1 kcal/mol and show different characteristics: all species but histidine are most likely bound to oxygens belonging to the phosphate and to the glycerol groups. Histidine shows a clear preference to be fully solvated by water whereas the aqueous solvation of serotonin is the less likely case of them all. No free permeation through the membrane of any small-molecule has been observed during the time span of the simulation experiments.
dc.format.extent6 p.
dc.language.isoeng
dc.rightsAttribution-NonCommercial-NoDerivs 3.0 Spain
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/3.0/es/
dc.subjectÀrees temàtiques de la UPC::Física
dc.subject.lcshPhospholipids
dc.subject.lcshMolecular dynamics
dc.subject.otherHelmholtz free energy
dc.subject.otherPhospholipid membrane
dc.subject.otherSmall-molecule
dc.subject.otherMolecular dynamics
dc.titleBinding free energies of small-molecules in phospholipid membranes: aminoacids, serotonin and melatonin
dc.typeArticle
dc.subject.lemacFosfolípids
dc.subject.lemacDinàmica molecular
dc.contributor.groupUniversitat Politècnica de Catalunya. SIMCON - First-principles approaches to condensed matter physics: quantum effects and complexity
dc.identifier.doi10.1016/j.cplett.2018.10.006
dc.relation.publisherversionhttps://www.sciencedirect.com/science/article/abs/pii/S0009261418308169
dc.rights.accessOpen Access
local.identifier.drac23409106
dc.description.versionPreprint
local.citation.authorLu, H.; Marti, J.
local.citation.publicationNameChemical physics letters
local.citation.volume712
local.citation.startingPage190
local.citation.endingPage195


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Attribution-NonCommercial-NoDerivs 3.0 Spain
Except where otherwise noted, content on this work is licensed under a Creative Commons license : Attribution-NonCommercial-NoDerivs 3.0 Spain