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dc.contributor.authorPicart Armada, Sergio
dc.contributor.authorThompson, Wesley
dc.contributor.authorBuil, Alfonso
dc.contributor.authorPerera Lluna, Alexandre
dc.contributor.otherUniversitat Politècnica de Catalunya. Departament d'Enginyeria de Sistemes, Automàtica i Informàtica Industrial
dc.date.accessioned2018-02-12T15:59:16Z
dc.date.available2019-02-01T01:31:10Z
dc.date.issued2018-02-01
dc.identifier.citationPicart, S., Thompson, W., Buil, A., Perera, A. diffuStats: an R package to compute diffusion-based scores on biological networks. "Bioinformatics", 1 Febrer 2018, vol. 34, núm. 3, p. 533-534.
dc.identifier.issn1460-2059
dc.identifier.urihttp://hdl.handle.net/2117/114063
dc.descriptionThis is a pre-copyedited, author-produced version of an article accepted for publication in Bioinformatics following peer review. The version of record Sergio Picart-Armada, Wesley K Thompson, Alfonso Buil, Alexandre Perera-Lluna; diffuStats: an R package to compute diffusion-based scores on biological networks, Bioinformatics, Volume 34, Issue 3, 1 February 2018, Pages 533–534 is available online at: https://doi.org/10.1093/bioinformatics/btx632.
dc.description.abstractLabel propagation and diffusion over biological networks are a common mathematical formalism in computational biology for giving context to molecular entities and prioritising novel candidates in the area of study. There are several choices in conceiving the diffusion process -involving the graph kernel, the score definitions and the presence of a posterior statistical normalisation- which have an impact on the results. This manuscript describes diffuStats, an R package that provides a collection of graph kernels and diffusion scores, as well as a parallel permutation analysis for the normalised scores, that eases the computation of the scores and their benchmarking for an optimal choice.
dc.format.extent2 p.
dc.language.isoeng
dc.rightsAttribution-NonCommercial-NoDerivs 3.0 Spain
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/3.0/es/
dc.subjectÀrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica
dc.subject.lcshComputational biology
dc.subject.lcshR (Computer program language)
dc.subject.otherBiological networks Genetic networks Network analysis Networks Classification
dc.titlediffuStats: an R package to compute diffusion-based scores on biological networks
dc.typeArticle
dc.subject.lemacBiologia computacional
dc.subject.lemacR (Llenguatge de programació)
dc.contributor.groupUniversitat Politècnica de Catalunya. SISBIO - Senyals i Sistemes Biomèdics
dc.identifier.doi10.1093/bioinformatics/btx632
dc.description.peerreviewedPeer Reviewed
dc.relation.publisherversionhttps://academic.oup.com/bioinformatics/article-abstract/34/3/533/4347202?redirectedFrom=fulltext
dc.rights.accessOpen Access
drac.iddocument21691639
dc.description.versionPostprint (author's final draft)
dc.relation.projectidinfo:eu-repo/grantAgreement/MINECO/1PE/TEC2014-60337-R
upcommons.citation.authorPicart, S., Thompson, W., Buil, A., Perera, A.
upcommons.citation.publishedtrue
upcommons.citation.publicationNameBioinformatics
upcommons.citation.volume34
upcommons.citation.number3
upcommons.citation.startingPage533
upcommons.citation.endingPage534


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