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Mathematical topics in phylogenetics
| dc.contributor | Casanellas Rius, Marta |
| dc.contributor | Von Haeseler, Arndt |
| dc.contributor.author | Pérez De Los Cobos Hermosa, Cassius Manuel |
| dc.contributor.other | Universitat Politècnica de Catalunya. Departament de Matemàtiques |
| dc.date.accessioned | 2017-05-02T11:54:19Z |
| dc.date.available | 2017-05-02T11:54:19Z |
| dc.date.issued | 2017-03 |
| dc.identifier.uri | http://hdl.handle.net/2117/103899 |
| dc.description.abstract | An evolutionary process is frequently modeled as a sequence of the four bases A,C,G,T, each of them changing independently following a Markov process. The main goal of this project are two: first of all, we wanted to understand and explain, from a mathematically rigorous point of view, the modeling of an evolutionary process as a continuous Markov process, and why Lie Markov models are an adequate option for this task. Secondly, we explain how we tried to improve a previous implementation of Lie Markov models in IQ-TREE, an algorithm for inferring phylogenies. |
| dc.language.iso | eng |
| dc.publisher | Universitat Politècnica de Catalunya |
| dc.rights.uri | http://creativecommons.org/licenses/by-nc-nd/3.0/es/ |
| dc.subject | Àrees temàtiques de la UPC::Matemàtiques i estadística::Anàlisi matemàtica |
| dc.subject.lcsh | Genetics |
| dc.subject.lcsh | Population dynamics |
| dc.subject.other | Phylogeny |
| dc.subject.other | Lie markov models |
| dc.title | Mathematical topics in phylogenetics |
| dc.type | Master thesis |
| dc.subject.lemac | Dinàmica de poblacions |
| dc.subject.lemac | Genètica |
| dc.subject.ams | Classificació AMS::92 Biology and other natural sciences::92D Genetics and population dynamics |
| dc.identifier.slug | FME-1417 |
| dc.rights.access | Open Access |
| dc.date.updated | 2017-04-28T05:22:10Z |
| dc.audience.educationlevel | Màster |
| dc.audience.mediator | Universitat Politècnica de Catalunya. Facultat de Matemàtiques i Estadística |
| dc.audience.degree | MÀSTER UNIVERSITARI EN MATEMÀTICA AVANÇADA I ENGINYERIA MATEMÀTICA (Pla 2010) |
| dc.contributor.covenantee | Max F. Perutz Laboratories |
| dc.contributor.covenantee | Universität Wien |
| dc.description.mobility | Outgoing |
