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Physics-Based Visual Characterization of Molecular Interaction Forces
dc.contributor.author | Hermosilla, Pedro |
dc.contributor.author | Estrada, Jorge |
dc.contributor.author | Guallar, Victor |
dc.contributor.author | Ropinski, Timo |
dc.contributor.author | Vinacua, Álvar |
dc.contributor.author | Vázquez, Pere-Pau |
dc.contributor.other | Barcelona Supercomputing Center |
dc.date.accessioned | 2017-01-30T15:35:39Z |
dc.date.available | 2017-01-30T15:35:39Z |
dc.date.issued | 2017-01 |
dc.identifier.citation | Hermosilla, Pedro [et al.]. Physics-Based Visual Characterization of Molecular Interaction Forces. "IEEE Transactions on Visualization and Computer Graphics", Gener 2017, vol. 23, núm. 1, p. 731-740. |
dc.identifier.issn | 1077-2626 |
dc.identifier.uri | http://hdl.handle.net/2117/100316 |
dc.description.abstract | Molecular design procedures, such as drug design and protein engineering’ are complex processes, largely benefiting from computational resources but also from human analysis. In drug design, for example, a costly iterative loop involves simulations requiring long computation times, followed by a data analysis phase, which is conducted by domain scientists using numerical analysis and visualization tools. Once some clues favoring or hindering binding have been understood, the ligand is modified by taking into account these clues, and another iteration is performed. In typical cases, computer simulation times range from hours to weeks, depending on the complexity of the molecules and the methods used. Recent advances have led to a reduction in computation time by exploiting modern supercomputers [7] in combination with modern simulation algorithms [33]. These advances in parallel computation thus allow for the computation of many simulation paths at the same time. This increase in available data also implies that the requirements for analysis tools become more demanding. |
dc.description.sponsorship | This project has been supported by TIN2014-52211-C2-1-R by the Spanish Ministerio de Economía y Competitividad with EU FEDER funds. We thank EAPM group members (BSC) and especially Sandra Acebes, for help in data preparation. |
dc.format.extent | 10 p. |
dc.language.iso | eng |
dc.publisher | IEEE |
dc.subject | Àrees temàtiques de la UPC::Enginyeria biomèdica |
dc.subject.lcsh | Molecular biology |
dc.subject.lcsh | Proteins--Analysis |
dc.subject.other | Binding analysis |
dc.subject.other | Molecular visualization |
dc.title | Physics-Based Visual Characterization of Molecular Interaction Forces |
dc.type | Article |
dc.subject.lemac | Proteïnes--Anàlisi |
dc.subject.lemac | Biologia molecular |
dc.identifier.doi | 10.1109/TVCG.2016.2598825 |
dc.description.peerreviewed | Peer Reviewed |
dc.relation.publisherversion | http://ieeexplore.ieee.org/document/7539331/ |
dc.rights.access | Open Access |
dc.description.version | Postprint (author's final draft) |
dc.relation.projectid | info:eu-repo/grantAgreement/MINECO//TIN2014-52211-C2-1-R/ES/GENERACION, SIMULACION Y VISUALIZACION DE MODELOS 3D A PARTIR DE GRANDES CONJUNTOS DE DATOS. APLICACIONES EN LA MEJORA DE LA CALIDAD DE VIDA DE LAS PERSONAS Y SU ENTORNO/ |
local.citation.publicationName | IEEE Transactions on Visualization and Computer Graphics |
local.citation.volume | 23 |
local.citation.number | 1 |
local.citation.startingPage | 731 |
local.citation.endingPage | 740 |
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