Geometric diagrams of genomes: constructing a visual grammar for 3D genomics

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dc.contributor.authorMolins Pitarch, Carla
dc.contributor.authorKhao, Jonathan
dc.contributor.authorBonet, Santiago
dc.contributor.authorJusticia, Yolanda
dc.contributor.authorAltube, Clementina
dc.contributor.authorGoodstadt, Mike
dc.contributor.authorRibot Puntí, Francesc
dc.contributor.authorAiden, Erez Lieberman
dc.contributor.authorNeretti, Nicola
dc.contributor.authorMcGill, Gaël G.
dc.contributor.authorMartí Renom, Marc A.
dc.contributor.groupUniversitat Politècnica de Catalunya. DICODE - Digital Culture and Creative Technologies Research Group
dc.contributor.otherFundació Politècnica de Catalunya. Centre de la Imatge i la Tecnologia Multimèdia
dc.date.accessioned2025-07-18T07:15:52Z
dc.date.issued2025-06-26
dc.description.abstractAdvances in the feld of three-dimensional (3D) genomics have revealed an everexpanding array of architectural features that were unknown only a few years ago. Just as ribbon diagrams integrate spatial and symbolic representation to communicate the shape of a protein, the representation of genomes in 3D space requires the devel- opment and use of new cartographic symbols and visual conventions. Here, we pro- pose a conceptualized grammar that makes it easier to create visual 3D representations of genomes.
dc.description.peerreviewedPeer Reviewed
dc.description.sponsorshipThis project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Sklodowska-Curie grant agreement No 823327 to M.A.M-R. and F.R. M.A.M-R. also acknowledges support by the Spanish Ministerio de Ciencia e Innovación (PID2020-115696RB-I00 and PID2023-151484NB-I00). M.A.M-R., E.L.A., and N.N. acknowledge support by the National Human Genome Research Institute of the National Institutes of Health under Award Number RM1HG011016. The content is solely the responsibility of the authors and does not necessarily represent the ofcial views of the National Institutes of Health.
dc.description.versionPostprint (published version)
dc.identifier.citationMolins-Pitarch, C. [et al.]. Geometric diagrams of genomes: constructing a visual grammar for 3D genomics. «Genome biology», 26 Juny 2025, vol. 26, núm. article 181.
dc.identifier.doi10.1186/s13059-025-03646-y
dc.identifier.issn1474-760X
dc.identifier.urihttps://hdl.handle.net/2117/438937
dc.language.isoeng
dc.publisherSpringer
dc.relation.publisherversionhttps://genomebiology.biomedcentral.com/articles/10.1186/s13059-025-03646-y
dc.rights.accessOpen Access
dc.rights.licensenameAttribution 4.0 International
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.subjectÀrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica
dc.subject.lcshHuman genome
dc.subject.lcshGenomics
dc.subject.lcshThree-dimensional imaging
dc.subject.lemacGenòmica
dc.subject.lemacGenoma humà
dc.subject.lemacImatgeria tridimensional
dc.titleGeometric diagrams of genomes: constructing a visual grammar for 3D genomics
dc.typeArticle
dspace.entity.typePublication
local.citation.authorMolins-Pitarch, C.; Khao, J.; Bonet, S.; Justicia, Y.; Altube, C.; Goodstadt, M.; Ribot, F.; Aiden, E.; Neretti, N.; McGill, G.; Martí, M.
local.citation.numberarticle 181
local.citation.publicationNameGenome biology
local.citation.volume26
local.identifier.drac42569028

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