A new damage feature index is presented for the structural health monitoring based on Hilbert-Huang transform (HHT). The energy marginal spectrum of the dynamic signal is used to construct damage characteristic parameter, which can reflect the signal energy variation and benefit the structural damage detection. A sinusoidal wave with frequency change and a composite plate vibration experiment with pre-defined damage are designed to verify the effectiveness of characteristic parameter in damage detection. Results obtained from simulation and test show that the extracted non-model-based damage feature index is available and sensitive in damage detection of time-varying system.