Real-time molecular visualization supporting diffuse interreflections and ambient occlusion

dc.contributor.authorSkanberg, Robin
dc.contributor.authorVázquez Alcocer, Pere Pau
dc.contributor.authorGuallar, Víctor
dc.contributor.authorRopinski, Timo
dc.contributor.groupUniversitat Politècnica de Catalunya. ViRVIG - Grup de Recerca en Visualització, Realitat Virtual i Interacció Gràfica
dc.contributor.otherUniversitat Politècnica de Catalunya. Departament de Ciències de la Computació
dc.contributor.otherBarcelona Supercomputing Center
dc.date.accessioned2016-02-04T12:27:48Z
dc.date.available2016-02-04T12:27:48Z
dc.date.issued2016-01-01
dc.description.abstractToday molecular simulations produce complex data sets capturing the interactions of molecules in detail. Due to the complexity of this time-varying data, advanced visualization techniques are required to support its visual analysis. Current molecular visualization techniques utilize ambient occlusion as a global illumination approximation to improve spatial comprehension. Besides these shadow-like effects, interreflections are also known to improve the spatial comprehension of complex geometric structures. Unfortunately, the inherent computational complexity of interreflections would forbid interactive exploration, which is mandatory in many scenarios dealing with static and time-varying data. In this paper, we introduce a novel analytic approach for capturing interreflections of molecular structures in real-time. By exploiting the knowledge of the underlying space filling representations, we are able to reduce the required parameters and can thus apply symbolic regression to obtain an analytic expression for interreflections. We show how to obtain the data required for the symbolic regression analysis, and how to exploit our analytic solution to enhance interactive molecular visualizations.
dc.description.peerreviewedPeer Reviewed
dc.description.sponsorshipAll static molecules have been obtained from the RCSB Protein Data Bank (http://www.rcsb.org), while the dynamic bind-ing studies have been computed using the PELE Monte Carlo solver (http://pele.bsc.es ) in cooperation with the pharmaceutical company AstraZeneca. This research is partially supported by TIN2014-52211-C2-1-R from the Spanish Government.
dc.description.versionPostprint (author's final draft)
dc.format.extent10 p.
dc.identifier.citationSkanberg, R., Vázquez, P., Guallar, V., Ropinski, T. Real-time molecular visualization supporting diffuse interreflections and ambient occlusion. "IEEE transactions on visualization and computer graphics", 01 Gener 2016, vol. 22, núm. 1, p. 718-727.
dc.identifier.doi10.1109/TVCG.2015.2467293
dc.identifier.issn1077-2626
dc.identifier.urihttps://hdl.handle.net/2117/82543
dc.language.isoeng
dc.relation.projectidinfo:eu-repo/grantAgreement/MINECO//TIN2014-52211-C2-1-R/ES/GENERACION, SIMULACION Y VISUALIZACION DE MODELOS 3D A PARTIR DE GRANDES CONJUNTOS DE DATOS. APLICACIONES EN LA MEJORA DE LA CALIDAD DE VIDA DE LAS PERSONAS Y SU ENTORNO/
dc.relation.publisherversionhttp://ieeexplore.ieee.org/document/7192702/
dc.rights.accessOpen Access
dc.subjectÀrees temàtiques de la UPC::Informàtica::Infografia
dc.subject.lcshThree dimensional imaging
dc.subject.lcshInformation visualization
dc.subject.lemacInfografia tridimensional
dc.subject.lemacVisualització de la informació
dc.subject.otherMolecular visualization
dc.subject.otherDiffuse interreflections
dc.subject.otherAmbient occlusion
dc.titleReal-time molecular visualization supporting diffuse interreflections and ambient occlusion
dc.typeArticle
dspace.entity.typePublication
local.citation.authorSkanberg, R.; Vázquez, P.; Guallar, V.; Ropinski, T.
local.citation.endingPage727
local.citation.number1
local.citation.publicationNameIEEE transactions on visualization and computer graphics
local.citation.startingPage718
local.citation.volume22
local.identifier.drac17269719

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