Browsing by Author "Pesole, Graziano"
Now showing items 1-6 of 6
-
BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS
Fosso, Bruno; Santamaria, Monica; Marzano, Marinella; Alonso-Alemany, Daniel; Valiente Feruglio, Gabriel Alejandro; Donvito, Giacinto; Monaco, Alfonso; Notarangelo, Pasquale; Pesole, Graziano (2015-07-01)
Article
Open AccessBackground: Substantial advances in microbiology, molecular evolution and biodiversity have been carried out in recent years thanks to Metagenomics, which allows to unveil the composition and functions of mixed microbial ... -
Complexity and dynamics of the winemaking bacterial communities in berries, musts, and wines from apulian grape cultivars through time and space
Marzano, Marinella; Fosso, Bruno; Manzari, Caterina; Grieco, Francesco; Intranuovo, Marianna; Cozzi, Giuseppe; Mulè, Giuseppina; Scioscia, Gaetano; Valiente Feruglio, Gabriel Alejandro; Tullo, Apollonia; Sbisa, Elisabetta; Pesole, Graziano; Santamaria, Monica (2016-06-14)
Article
Open AccessCurrently, there is very little information available regarding the microbiome associated with the wine production chain. Here, we used an amplicon sequencing approach based on high-throughput sequencing (HTS) to obtain a ... -
MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data
Fosso, Bruno; Santamaria, Monica; D'Antonio, M.; Lovero, D.; Corrado, G.; Vizza, E.; Passaro, N.; Garbuglia, A.R.; Capobianchi, M.R.; Crescenzi, M.; Valiente Feruglio, Gabriel Alejandro; Pesole, Graziano (2017-06-01)
Article
Open AccessShotgun metagenomics by high-throughput sequencing may allow deep and accurate characterization of host-associated total microbiomes, including bacteria, viruses, protists and fungi. However, the analysis of such sequencing ... -
Reference databases for taxonomic assignment in metagenomics
Santamaria, Monica; Fosso, Bruno; Consiglio, Arianna; De Caro, Giorigio; Grillo, Giorgio; Licciulli, Flavio; Liuni, Sabino; Marzano, Marinella; Alonso-Alemany, Daniel; Valiente Feruglio, Gabriel Alejandro; Pesole, Graziano (2012-11)
Article
Restricted access - publisher's policyMetagenomics is providing an unprecedented access to the environmental microbial diversity. The amplicon-based metagenomics approach involves the PCR-targeted sequencing of a genetic locus fitting different features. Namely, ... -
Unbiased taxonomic annotation of metagenomic samples
Fosso, Bruno; Pesole, Graziano; Rosselló, Francesc; Valiente Feruglio, Gabriel Alejandro (Springer, 2017)
Conference report
Open AccessThe classification of reads from a metagenomic sample using a reference taxonomy is usually based on first mapping the reads to the reference sequences and then, classifying each read at a node under the lowest common ... -
Unbiased taxonomic annotation of metagenomic samples
Fosso, Bruno; Pesole, Graziano; Rosselló Llompart, Francesc A.; Valiente Feruglio, Gabriel Alejandro (2018-03)
Article
Open AccessThe classification of reads from a metagenomic sample using a reference taxonomy is usually based on first mapping the reads to the reference sequences and then classifying each read at a node under the lowest common ...