Browsing by Author "Isaza, Sebastian"
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Preliminary analysis of the cell BE processor limitations for sequence alignment applications
Isaza, Sebastian; Sánchez Castaño, Friman; Gaydadjiev, Georgi; Ramírez Bellido, Alejandro; Valero Cortés, Mateo (Springer, 2008-07-21)
Conference report
Restricted access - publisher's policyThe fast growth of bioinformatics field has attracted the attention of computer scientists in the last few years. At the same time the increasing database sizes require greater efforts to improve the computational performance. ... -
Scalability analysis of progressive alignment in a multicore
Isaza, Sebastian; Sánchez Castaño, Friman; Gaydadjiev, Georgi; Ramírez Bellido, Alejandro; Valero Cortés, Mateo (IEEE Press. Institute of Electrical and Electronics Engineers, 2010)
Conference report
Open AccessSequence alignment is a fundamental instrument in Bioinformatics. In recent years, numerous proposals have been addressing the problem of accelerating this class of applications. This, due to the rapid growth of sequence ... -
The SARC architecture
Gaydadjiev, Georgi; Isaza, Sebastian; Ramírez Bellido, Alejandro; Cabarcas, Felipe; Juurlink, Ben; Álvarez Mesa, Mauricio; Sánchez Castaño, Friman; Azevedo, Arnaldo; Meenderinck, Cor; Ciobanu, Catalin (2010-10)
Article
Open AccessThe SARC architecture is composed of multiple processor types and a set of user-managed direct memory access (DMA) engines that let the runtime scheduler overlap data transfer and computation. The runtime system automatically ...