Browsing by Subject "Genòmica"
Now showing items 1-20 of 43
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Adding security and privacy to genomic information representation
(IOS Press, 2019)
Conference lecture
Open AccessProvision of security and privacy to genomic data is a key issue in current genomic information representation. Existing formats do not give a solution to these issues (or they provide a partial one), so new solutions are ... -
Adding security and privacy to genomic information representation
(2019)
Article
Open AccessProvision of security and privacy to genomic data is a key issue in current genomic information representation. Existing formats do not give a solution to these issues (or they provide a partial one), so new solutions are ... -
A FM-index transformation to enable large k-steps
(Barcelona Supercomputing Center, 2019-05-07)
Conference report
Open Access -
A model of large-scale proteome evolution
(2002-03)
Article
Open AccessThe next step in the understanding of the genome organization, after the determination of complete sequences, involves proteomics. The proteome includes the whole set of protein-protein interactions, and two recent independent ... -
A multilayer network approach to elucidate severity in Congenital Myasthenic Syndromes
(Barcelona Supercomputing Center, 2019-05-07)
Conference report
Open Access -
A novel MMR pathway in prokaryotes
(Barcelona Supercomputing Center, 2019)
Other
Open Access -
Assessment of kinship detection using RNA-seq data
(2019-12-02)
Article
Open AccessAnalysis of RNA sequencing (RNA-seq) data from related individuals is widely used in clinical and molecular genetics studies. Prediction of kinship from RNA-seq data would be useful for confirming the expected relationships ... -
Big data analytics for obesity prediction
(Universitat Politècnica de Catalunya, 2018-04-26)
Master thesis
Open Access
Covenantee: Fundació EurecatFeature selection is an important technique to find the most relevant features. Apache Spark is a big data processing framework but unable to cope with approx. 0.74 million features in our Obesity dataset. However, we ... -
BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data
(2016-01-04)
Article
Open AccessMolecular dynamics simulation (MD) is, just behind genomics, the bioinformatics tool that generates the largest amounts of data, and that is using the largest amount of CPU time in supercomputing centres. MD trajectories ... -
Building from scratch: de novo gene birth
(Barcelona Supercomputing Center, 2019)
Other
Open Access -
Chromatin 3D organization revealed by chromatin networks: gene-regulation, replication, and beyond
(Barcelona Supercomputing Center, 2019)
Other
Open Access -
Class c gpcr metabotropic glutamate receptors subtype discrimination using computation intelligence methods
(Universitat Politècnica de Catalunya, 2014-11-16)
Master thesis
Open Access -
Complex networks in genomics and proteomics
(Wiley-VCH, 2003)
Part of book or chapter of book
Restricted access - publisher's policyComplex interacting networks are observed in systems from such diverse areas as physics, biology, economics, ecology, and computer science. For example, economic or social interactions often organize themselves in complex ... -
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment
(2007-07)
Article
Open AccessSimilarity of sequences is a key mathematical notion for Classification and Phylogenetic studies in Biology. It is currently primarily handled using alignments. However, the alignment methods seem inadequate for post-genomic ... -
Computational approaches for personalised medicine: from crowdsourced machine learning to dynamic mechanistic models
(Barcelona Supercomputing Center, 2019)
Other
Open Access -
Considerations in using OpenCL on GPUs and FPGAs for throughput-oriented genomics workloads
(Elsevier, 2019-05)
Article
Open AccessThe recent upsurge in the available amount of health data and the advances in next-generation sequencing are setting the ground for the long-awaited precision medicine. To process this deluge of data, bioinformatics workloads ... -
Creation of a domain specific language to manage bioinformatic tasks
(Universitat Politècnica de Catalunya, 2020-01-16)
Bachelor thesis
Restricted access - confidentiality agreement -
Critical analysis and comparison of data protection techniques for genomics data sets
(Universitat Politècnica de Catalunya, 2016-07-04)
Master thesis
Open AccessThis work reviews the current literature on protecting genomic information. The goal is to provide insight on how to define a secure file format for such data. We compare the published ideas to the requirements defined by ... -
Enabling interpretation of the outcome of a human obesity prediction machine learning analysis from genomic data
(2018)
External research report
Open AccessIn this brief paper, we address the medical problem of human obesity prediction from genomic data. Genomic datasets may contain a huge number of features and they often have to be analyzed within the realm of Big Data ... -
Evolution of tandem repeat satellite sequences in two closely related caenorhabditis species: Diminution of satellites in hermaphrodites
(2017-12-01)
Article
Open AccessThe availability of the genome sequence of the unisexual (male-female) Caenorhabditis nigoni offers an opportunity to compare its non-coding features with the related hermaphroditic species Caenorhabditis briggsae; to ...
