Browsing by Subject "Biologia computacional"
Now showing items 1-20 of 46
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A FM-index transformation to enable large k-steps
(Barcelona Supercomputing Center, 2019-05-07)
Conference report
Open Access -
A hybrid evolutionary algorithm based on solution merging for the longest arc-preserving common subsequence problem
(Institute of Electrical and Electronics Engineers (IEEE), 2017)
Conference lecture
Open AccessThe longest arc-preserving common subsequence problem is an NP-hard combinatorial optimization problem from the field of computational biology. This problem finds applications, in particular, in the comparison of art-annotated ... -
A hybrid evolutionary algorithm based on solution merging for the longest arc-preserving common subsequence problem
(2017)
External research report
Open AccessThe longest arc-preserving common subsequence problem is an NP-hard combinatorial optimization problem from the field of computational biology. This problem finds applications, in particular, in the comparison of arc-annotated ... -
A multilayer network approach to elucidate severity in Congenital Myasthenic Syndromes
(Barcelona Supercomputing Center, 2019-05-07)
Conference report
Open Access -
A novel MMR pathway in prokaryotes
(Barcelona Supercomputing Center, 2019)
Other
Open Access -
Adaptive simulations, towards interactive protein-ligand modeling
(2017-08-16)
Article
Open AccessModeling the dynamic nature of protein-ligand binding with atomistic simulations is one of the main challenges in computational biophysics, with important implications in the drug design process. Although in the past few ... -
Alignment of biological networks by integer linear programming: virus-host protein-protein interaction networks
(2020-11-18)
Article
Open AccessBackground: The alignment of protein-protein interaction networks was recently formulated as an integer quadratic programming problem, along with a linearization that can be solved by integer linear programming software ... -
An integrative approach for modeling and simulation of heterocyst pattern formation in cyanobacteria filaments
(2015-03-01)
Article
Open AccessHeterocyst differentiation in cyanobacteria filaments is one of the simplest examples of cellular differentiation and pattern formation in multicellular organisms. Despite of the many experimental studies addressing the ... -
Analysis of self-overlap reveals trade-offs in plankton swimming trajectories
(2014-07-06)
Article
Restricted access - publisher's policyMovement is a fundamental behaviour of organisms that not only brings about beneficial encounters with resources and mates, but also at the same time exposes the organism to dangerous encounters with predators. The movement ... -
Analysis of viscoelastic cell structures with dynamic topology
(Universitat Politècnica de Catalunya, 2012-06-29)
Minor thesis / Master thesis
Open Access[ANGLÈS] The present work proposes a way to model cell cytoskeleton using truss systems. This allows large deformations and rotations to be handled in a natural way. With this intention a framework has been developed ... -
Building from scratch: de novo gene birth
(Barcelona Supercomputing Center, 2019)
Other
Open Access -
Chromatin 3D organization revealed by chromatin networks: gene-regulation, replication, and beyond
(Barcelona Supercomputing Center, 2019)
Other
Open Access -
Coevolution and epistasis in antibiotic-resistant beta- lactamases
(Barcelona Supercomputing Center, 2019)
Other
Open Access -
Comparison of algorithms for the detection of cancer drivers at subgene resolution
(Nature Publishing Group, 2017-08)
Article
Open AccessUnderstanding genetic events that lead to cancer initiation and progression remains one of the biggest challenges in cancer biology. Traditionally, most algorithms for cancer-driver identification look for genes that have ... -
Comparison of Tree-Child Phylogenetic Networks
(2009-11-03)
Article
Open AccessPhylogenetic networks are a generalization of phylogenetic trees that allow for the representation of nontreelike evolutionary events, like recombination, hybridization, or lateral gene transfer. While much progress has ... -
Computational approaches for personalised medicine: from crowdsourced machine learning to dynamic mechanistic models
(Barcelona Supercomputing Center, 2019)
Other
Open Access -
Computational modeling of electromechanical propagation in the helical ventricular anatomy of the heart
(Elsevier, 2013-07-31)
Article
Open AccessThe classical interpretation of myocardial activation assumes that the myocardium is homogeneous and that the electrical propagation is radial. However, anatomical studies have described a layered anatomical structure ... -
Computational modelling suggests complex interactions between interstitial flow and tumour angiogenesis
(2018-09-01)
Article
Open AccessAngiogenesis, the growth of capillaries from pre-existing ones, plays a key role in cancer progression. Tumours release tumour angiogenic factors (TAFs) into the extracellular matrix (ECM) that trigger angiogenesis once ... -
Containers in HPC: a scalability and portability study in production biological simulations
(Barcelona Supercomputing Center, 2019-05-07)
Conference report
Open Access -
Development of a computational model of abscess formation
(2018-06-26)
Article
Open AccessIn some bacterial infections, the immune system cannot eliminate the invading pathogen. In these cases, the invading pathogen is successful in establishing a favorable environment to survive and persist in the host organism. ...
