Browsing by Author "Arroyo Balaguer, Marino"
Now showing items 1-20 of 99
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A finite deformation membrane based on inter-atomic potentials for the transverse mechanics of nanotubes
Arroyo Balaguer, Marino; Belytschko, T. (2003-03)
Article
Open AccessA finite deformation hyper-elastic membrane theory based on inter-atomic potentials for crystalline films composed of a single atomic layer is developed. For this purpose, an extension of the standard Born rule that exploits ... -
A physical mechanism of TANGO1-mediated bulky cargo export
Raote, Ishier; Chabanon, Morgan; Walani, Nikhil; Arroyo Balaguer, Marino; Garcia-Parajo, Maria F.; Malhotra, Vivek; Campelo Aubarell, Felix (2020-11-10)
Article
Open AccessThe endoplasmic reticulum (ER)-resident protein TANGO1 assembles into a ring around ER exit sites (ERES), and links procollagens in the ER lumen to COPII machinery, tethers, and ER-Golgi intermediate compartment (ERGIC) ... -
A stabilized formulation with maximum entropy meshfree approximants for viscoplastic flow simulation in metal forming
Greco, F.; Filice, L.; Peco, Christian; Arroyo Balaguer, Marino (2015-07-01)
Article
Open AccessThe finite element method is the reference technique in the simulation of metal forming and provides excellent results with both Eulerian and Lagrangian implementations. The latter approach is more natural and direct but ... -
A theory of ordering of elongated and curved proteins on membranes driven by density and curvature
Tozzi, Caterina; Walani, Nikhil; Le Roux, Anabel-Lise; Roca-cusachs Solere, Pere; Arroyo Balaguer, Marino (2021-02-02)
Article
Open AccessCell membranes interact with a myriad of curvature-active proteins that control membrane morphology and are responsible for mechanosensation and mechanotransduction. Some of these proteins, such as those containing BAR ... -
A variational model of fracture for tearing brittle thin sheets
Li, Bin; Millán Zurita, Daniel; Torres Sánchez, Alejandro; Arroyo Balaguer, Marino (2018-10)
Article
Open AccessTearing of brittle thin elastic sheets, possibly adhered to a substrate, involves a rich interplay between nonlinear elasticity, geometry, adhesion, and fracture mechanics. In addition to its intrinsic and practical interest, ... -
Active superelasticity in three-dimensional epithelia of controlled shape
Latorre Ibars, Ernest; Kale, Sohan Sudhir; Casares, Laura; Arroyo Balaguer, Marino (Macmillan Publishers, 2018-11)
Article
Open AccessFundamental biological processes are carried out by curved epithelial sheets that enclose a pressurized lumen. How these sheets develop and withstand three-dimensional deformations has remained unclear. Here we combine ... -
Adaptivity based on error estimation for viscoplastic softening materials
Díez, Pedro; Arroyo Balaguer, Marino; Huerta, Antonio (2000-02)
Article
Open AccessThis paper focuses on the numerical simulation of strain softening mechanical problems. Two problems arise: (1) the constitutive model has to be regular and (2) the numerical technique must be able to capture the two scales ... -
Adhesion and friction control localized folding in supported graphene
Zhang, Kuan; Arroyo Balaguer, Marino (American Institute of Physics (AIP), 2013-05)
Article
Restricted access - publisher's policyGraphene deposited on planar surfaces often exhibits sharp and localized folds delimiting seemingly planar regions, as a result of compressive stresses transmitted by the substrate. Such folds alter the electronic and ... -
An adaptive meshfree method for phase-field models of biomembranes. Part I: Approximation with maximum-entropy basis functions
Peco Regales, Christian; Arroyo Balaguer, Marino; Rosolen, Adrian Martin (2013-09)
Article
Restricted access - publisher's policyWe present an adaptive meshfree method to approximate phase-field models of biomembranes. In such models, the Helfrich curvature elastic energy, the surface area, and the enclosed volume of a vesicle are written as functionals ... -
An adaptive meshfree method for phase-field models of biomembranes. Part II: A Lagrangian approach for membranes in viscous fluids
Peco Regales, Christian; Arroyo Balaguer, Marino; Rosolen, Adrian Martin (2013-09)
Article
Restricted access - publisher's policyWe present a Lagrangian phase-field method to study the low Reynolds number dynamics of vesicles embedded in a viscous fluid. In contrast to previous approaches, where the field variables are the phase-field and the fluid ... -
An atomistic-based finite deformation membrane for single layer crystalline films
Arroyo Balaguer, Marino; Belytschko, T (2002-09)
Article
Open AccessA general methodology to develop hyper-elastic membrane models applicable to crystalline films one-atom thick is presented. In this method, an extension of the Born rule based on the exponential map is proposed. The ... -
An atomistic-based foliation model for multilayer graphene materials and nanotubes
Ghosh, Susanta; Arroyo Balaguer, Marino (2013-01)
Article
Open AccessWe present a three-dimensional continuum model for layered crystalline materials made out of weakly interacting two-dimensional crystalline sheets. We specialize the model to multilayer graphene materials, including ... -
Approximation of tensor fields on surfaces of arbitrary topology based on local Monge parametrizations
Torres Sánchez, Alejandro; Santos Oliván, Daniel; Arroyo Balaguer, Marino (2020-03-15)
Article
Open AccessWe introduce a new method, the Local Monge Parametrizations (LMP) method, to approximate tensor fields on general surfaces given by a collection of local parametrizations, e.g. as in finite element or NURBS surface ... -
Blending isogeometric analysis and local maximum entropy meshfree approximants
Rosolen, Adrián; Arroyo Balaguer, Marino (2013-09)
Article
Open AccessWe present a method to blend local maximum entropy (LME) meshfree approximants and isogeometric analysis. The coupling strategy exploits the optimization program behind LME approximation, treats isogeometric and LME basis ... -
Caveolin-1 dolines form a distinct and rapid caveolae-independent mechanoadaptation system
Lolo, Fidel Nicolás; Walani, Nikhil; Seemann, Eric; Zalvidea, Dobryna; Pavón, Dácil María; Cojoc, Gheorghe; Zamai, Moreno; Viaris de Lesegno, Christine; Martínez de Benito, Fernando; Sánchez Álvarez, Miguel; Uriarte, Juan José; Echarri, Asier; Jiménez Carretero, Daniel; Escolano, Joan Carles; Sánchez Donoso, Susana Angélica; Arroyo Balaguer, Marino (Nature, 2022-12-21)
Article
Open AccessIn response to diferent types and intensities of mechanical force, cells modulate their physical properties and adapt their plasma membrane (PM). Caveolae are PM nano-invaginations that contribute to mechanoadaptation, ... -
Cell-based maximum entropy approximants
Millán, Raúl Daniel; Sukumar, N; Arroyo Balaguer, Marino (2015-02-01)
Article
Open AccessIn this paper, we devise cell-based maximum-entropy (max-ent) basis functions that are used in a Galerkin method for the solution of partial differential equations. The motivation behind this work is the construction of ... -
Cell-based maximum-entropy approximants
Millán, Daniel; Sukumar, N; Arroyo Balaguer, Marino (2015-02-01)
Article
Open AccessIn this paper, we devise cell-based maximum-entropy (max-ent) basis functions that are used in a Galerkin method for the solution of partial differential equations. The motivation behind this work is the construction of ... -
Charting molecular free-energy landscapes with an atlas of collective variables
Hashemian, B.; Millán, Raúl Daniel; Arroyo Balaguer, Marino (2016-11-07)
Article
Open AccessCollective variables (CVs) are a fundamental tool to understand molecular flexibility, to compute free energy landscapes, and to enhance sampling in molecular dynamics simulations. However, identifying suitable CVs is ... -
Coexistence of wrinkles and blisters in supported graphene
Zang, Kuan; Arroyo Balaguer, Marino (Elsevier, 2017-07-01)
Article
Open AccessBlisters induced by gas trapped in the interstitial space between supported graphene and the substrate are commonly observed. These blisters are often quasi-spherical with a circular rim, but polygonal blisters are also ... -
Combined molecular/continuum modeling reveals the role of friction during fast unfolding of coiled-coil proteins
Torres Sánchez, Alejandro; Vanegas, Juan Manuel; Purohit, Prashant K.; Arroyo Balaguer, Marino (2019-05-30)
Article
Open AccessCoiled-coils are filamentous proteins that form the basic building block of important force-bearing cellular elements, such as intermediate filaments and myosin motors. In addition to their biological importance, coiled-coil ...