Now showing items 1-3 of 3

    • CUDAlign 3.0: Parallel biological sequence comparison in large GPU clusters 

      De Sandes, Edans; Miranda Álamo, Guillermo; De Melo, Alba Cristina Magalhaes Alves; Martorell Bofill, Xavier; Ayguadé Parra, Eduard (Institute of Electrical and Electronics Engineers (IEEE), 2014)
      Conference report
      Restricted access - publisher's policy
      This paper proposes and evaluates a parallel strategy to execute the e+ xact Smith-Waterman (SW) biological sequence comparison algorithm for huge DNA sequences in multi-GPU platforms. In our strategy, the computation of ...
    • Fine-grain parallel megabase sequence comparison with multiple heterogeneous GPUs 

      De Sandes, Edans; Miranda Álamo, Guillermo; Melo, Alba; Martorell Bofill, Xavier; Ayguadé Parra, Eduard (Association for Computing Machinery (ACM), 2014)
      Conference report
      Restricted access - publisher's policy
      This paper proposes and evaluates a parallel strategy to execute the exact Smith-Waterman (SW) algorithm for megabase DNA sequences in heterogeneous multi-GPU platforms. In our strategy, the computation of a single huge ...
    • Fine-grain parallel megabase sequence comparison with multiple heterogeneous GPUs 

      De Sandes, Edans; Miranda Álamo, Guillermo; De Melo, Alba Cristina Magalhaes Alves; Martorell Bofill, Xavier; Ayguadé Parra, Eduard (2014-08-01)
      Article
      Restricted access - publisher's policy
      This paper proposes and evaluates a parallel strategy to execute the exact Smith-Waterman (SW) algorithm for megabase DNA sequences in heterogeneous multi-GPU platforms. In our strategy, the computation of a single huge ...