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Taxonomic assignment in metagenomics with TANGO
dc.contributor.author | Alonso-Alemany, Daniel |
dc.contributor.author | Clemente, José C. |
dc.contributor.author | Jansson, Jesper |
dc.contributor.author | Valiente Feruglio, Gabriel Alejandro |
dc.contributor.other | Universitat Politècnica de Catalunya. Departament de Llenguatges i Sistemes Informàtics |
dc.date.accessioned | 2012-07-18T10:22:39Z |
dc.date.available | 2012-07-18T10:22:39Z |
dc.date.created | 2011-12-01 |
dc.date.issued | 2011-12-01 |
dc.identifier.citation | Alonso-Alemany, D. [et al.]. Taxonomic assignment in metagenomics with TANGO. "EMBnet.journal", 01 Desembre 2011, vol. 17, núm. 2, p. 46-50. |
dc.identifier.issn | 1023-4144 |
dc.identifier.uri | http://hdl.handle.net/2117/16286 |
dc.description.abstract | One of the main computational challenges facing metagenomic analysis is the taxonomic identification of short DNA fragments. The combination of sequence alignment methods with taxonomic assignment based on consensus can provide an accurate estimate of the microbial diversity in a sample. In this note, we show how recent improvements to these consensus methods, as implemented in the latest release of the TANGO tool, can provide an improved estimate of diversity in simulated datasets. |
dc.format.extent | 5 p. |
dc.language.iso | eng |
dc.rights | Attribution-NonCommercial-NoDerivs 3.0 Spain |
dc.rights.uri | http://creativecommons.org/licenses/by-nc-nd/3.0/es/ |
dc.subject | Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica |
dc.subject.lcsh | Metagenomics |
dc.subject.lcsh | Taxonomic assignment |
dc.title | Taxonomic assignment in metagenomics with TANGO |
dc.type | Article |
dc.subject.lemac | Metagenòmica |
dc.subject.lemac | TANGO |
dc.contributor.group | Universitat Politècnica de Catalunya. ALBCOM - Algorismia, Bioinformàtica, Complexitat i Mètodes Formals |
dc.description.peerreviewed | Peer Reviewed |
dc.relation.publisherversion | http://journal.embnet.org/index.php/embnetjournal/article/view/237/531 |
dc.rights.access | Open Access |
local.identifier.drac | 9466783 |
dc.description.version | Postprint (published version) |
local.citation.author | Alonso-Alemany, D.; Clemente, J.; Jansson, J.; Valiente, G. |
local.citation.publicationName | EMBnet.journal |
local.citation.volume | 17 |
local.citation.number | 2 |
local.citation.startingPage | 46 |
local.citation.endingPage | 50 |
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