Exploració per tema "Computational biology"
Ara es mostren els items 1-20 de 63
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A FM-index transformation to enable large k-steps
(Barcelona Supercomputing Center, 2019-05-07)
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A framework to assess the quality and impact of bioinformatics training across ELIXIR
(Public Library of Science (PLOS), 2020-07)
Article
Accés obertELIXIR is a pan-European intergovernmental organisation for life science that aims to coordinate bioinformatics resources in a single infrastructure across Europe; bioinformatics training is central to its strategy, which ... -
A hybrid evolutionary algorithm based on solution merging for the longest arc-preserving common subsequence problem
(Institute of Electrical and Electronics Engineers (IEEE), 2017)
Comunicació de congrés
Accés obertThe longest arc-preserving common subsequence problem is an NP-hard combinatorial optimization problem from the field of computational biology. This problem finds applications, in particular, in the comparison of art-annotated ... -
A hybrid evolutionary algorithm based on solution merging for the longest arc-preserving common subsequence problem
(2017)
Report de recerca
Accés obertThe longest arc-preserving common subsequence problem is an NP-hard combinatorial optimization problem from the field of computational biology. This problem finds applications, in particular, in the comparison of arc-annotated ... -
A multilayer network approach to elucidate severity in Congenital Myasthenic Syndromes
(Barcelona Supercomputing Center, 2019-05-07)
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A novel MMR pathway in prokaryotes
(Barcelona Supercomputing Center, 2019)
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Alignment of biological networks by integer linear programming: virus-host protein-protein interaction networks
(2020-11-18)
Article
Accés obertBackground: The alignment of protein-protein interaction networks was recently formulated as an integer quadratic programming problem, along with a linearization that can be solved by integer linear programming software ... -
An FPGA accelerator of the wavefront algorithm for genomics pairwise alignment
(Institute of Electrical and Electronics Engineers (IEEE), 2021)
Text en actes de congrés
Accés obertIn the last years, advances in next-generation sequencing technologies have enabled the proliferation of genomic applications that guide personalized medicine. These applications have an enormous computational cost due to ... -
An integrative approach for modeling and simulation of heterocyst pattern formation in cyanobacteria filaments
(2015-03-01)
Article
Accés obertHeterocyst differentiation in cyanobacteria filaments is one of the simplest examples of cellular differentiation and pattern formation in multicellular organisms. Despite of the many experimental studies addressing the ... -
Analysis of self-overlap reveals trade-offs in plankton swimming trajectories
(2014-07-06)
Article
Accés restringit per política de l'editorialMovement is a fundamental behaviour of organisms that not only brings about beneficial encounters with resources and mates, but also at the same time exposes the organism to dangerous encounters with predators. The movement ... -
Analysis of viscoelastic cell structures with dynamic topology
(Universitat Politècnica de Catalunya, 2012-06-29)
Tesina / Projecte Final de Màster Oficial
Accés obert[ANGLÈS] The present work proposes a way to model cell cytoskeleton using truss systems. This allows large deformations and rotations to be handled in a natural way. With this intention a framework has been developed ... -
Brewpitopes: a pipeline to refine B-cell epitope predictions during public health emergencies
(Frontiers Media, 2023)
Article
Accés obertThe application of B-cell epitope identification to develop therapeutic antibodies and vaccine candidates is well established. However, the validation of epitopes is time-consuming and resource-intensive. To alleviate this, ... -
Building from scratch: de novo gene birth
(Barcelona Supercomputing Center, 2019)
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Chromatin 3D organization revealed by chromatin networks: gene-regulation, replication, and beyond
(Barcelona Supercomputing Center, 2019)
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Coevolution and epistasis in antibiotic-resistant beta- lactamases
(Barcelona Supercomputing Center, 2019)
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Computational analysis of the electro-mechanical activation sequence of the myocardium
(2009)
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Computational approaches for personalised medicine: from crowdsourced machine learning to dynamic mechanistic models
(Barcelona Supercomputing Center, 2019)
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Computational modeling of electromechanical propagation in the helical ventricular anatomy of the heart
(Elsevier, 2013-07-31)
Article
Accés obertThe classical interpretation of myocardial activation assumes that the myocardium is homogeneous and that the electrical propagation is radial. However, anatomical studies have described a layered anatomical structure ... -
Computational modelling suggests complex interactions between interstitial flow and tumour angiogenesis
(2018-09-01)
Article
Accés obertAngiogenesis, the growth of capillaries from pre-existing ones, plays a key role in cancer progression. Tumours release tumour angiogenic factors (TAFs) into the extracellular matrix (ECM) that trigger angiogenesis once ... -
Containers in HPC: a scalability and portability study in production biological simulations
(Barcelona Supercomputing Center, 2019-05-07)
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