• Improving trimAl ability to cope with heterogeneous multiple sequence alignments 

      Fernández-Rodríguez, Víctor; Gabaldón, Toni; Capella-Gutierrez, Salvador (Barcelona Supercomputing Center, 2018-04-24)
      Text en actes de congrés
      Accés obert
    • Lessons Learned: Recommendations for Establishing Critical Periodic Scientific Benchmarking 

      Capella-Gutierrez, Salvador; de la Iglesia, Diana; Haas, Juergen; Lourenco, Analia; Fernandez, José M.; Repchevsky, Dmitry; Dessimoz, Christophe; Schwede, Torsten; Notredame, Cedric; Gelpí, Josep Lluís; Valencia, Alfonso (2017)
      Working paper
      Accés obert
      The dependence of life scientists on software has steadily grown in recent years. For many tasks, researchers have to decide which of the available bioinformatics software are more suitable for their specific needs. ...
    • LimTox: a web tool for applied text mining of adverse event and toxicity associations of compounds, drugs and genes 

      Cañada, Andres; Capella-Gutierrez, Salvador; Rabal, Obdulia; Oyarzabal, Julen; Valencia, Alfonso; Krallinger, Martin (Oxford University Press, 2017-05-22)
      Article
      Accés obert
      A considerable effort has been devoted to retrieve systematically information for genes and proteins as well as relationships between them. Despite the importance of chemical compounds and drugs as a central bio-entity in ...
    • Ten steps to get started in Genome Assembly and Annotation 

      Dominguez del Angel, Victoria; Hjerde, Erik; Sterck, Lieven; Capella-Gutierrez, Salvador; Notredame, Cederic; Vinnere Pettersson, Olga; Amselem, Joelle; Bouri, Laurent; Bocs, Stephanie; Klopp, Christophe; Gibrat, Jean-Francois; Vlasova, Anna; Leskosek, Brane L.; Soler, Lucile; Binzer-Panchal, Mahesh; Lantz, Henrik (F1000Research, 2018-02-05)
      Article
      Accés obert
      As a part of the ELIXIR-EXCELERATE efforts in capacity building, we present here 10 steps to facilitate researchers getting started in genome assembly and genome annotation. The guidelines given are broadly applicable, ...