Now showing items 1-3 of 3

  • Preliminary analysis of the cell BE processor limitations for sequence alignment applications 

    Isaza, Sebastian; Sánchez Castaño, Friman; Gaydadjiev, Georgi; Ramírez Bellido, Alejandro; Valero Cortés, Mateo (Springer, 2008-07-21)
    Conference report
    Restricted access - publisher's policy
    The fast growth of bioinformatics field has attracted the attention of computer scientists in the last few years. At the same time the increasing database sizes require greater efforts to improve the computational performance. ...
  • Scalability analysis of progressive alignment in a multicore 

    Isaza, Sebastian; Sánchez Castaño, Friman; Gaydadjiev, Georgi; Ramírez Bellido, Alejandro; Valero Cortés, Mateo (IEEE Press. Institute of Electrical and Electronics Engineers, 2010)
    Conference report
    Open Access
    Sequence alignment is a fundamental instrument in Bioinformatics. In recent years, numerous proposals have been addressing the problem of accelerating this class of applications. This, due to the rapid growth of sequence ...
  • The SARC architecture 

    Gaydadjiev, Georgi; Isaza, Sebastian; Ramírez Bellido, Alejandro; Cabarcas, Felipe; Juurlink, Ben; Álvarez Mesa, Mauricio; Sánchez Castaño, Friman; Azevedo, Arnaldo; Meenderinck, Cor; Ciobanu, Catalin (2010-10)
    Article
    Open Access
    The SARC architecture is composed of multiple processor types and a set of user-managed direct memory access (DMA) engines that let the runtime scheduler overlap data transfer and computation. The runtime system automatically ...