• Quantitative analysis of sequence alignment applications on multiprocessor architectures 

    Sánchez Castaño, Friman; Ramírez Bellido, Alejandro; Valero Cortés, Mateo (ACM Press. Association for Computing Machinery, 2009)
    Text en actes de congrés
    Accés restringit per política de l'editorial
    The exponential growth of databases that contains biological information (such as protein and DNA data) demands great efforts to improve the performance of computational platforms. In this work we investigate how bioinformatics ...
  • Scalability analysis of progressive alignment in a multicore 

    Isaza, Sebastian; Sánchez Castaño, Friman; Gaydadjiev, Georgi; Ramírez Bellido, Alejandro; Valero Cortés, Mateo (IEEE Press. Institute of Electrical and Electronics Engineers, 2010)
    Text en actes de congrés
    Accés obert
    Sequence alignment is a fundamental instrument in Bioinformatics. In recent years, numerous proposals have been addressing the problem of accelerating this class of applications. This, due to the rapid growth of sequence ...
  • The SARC architecture 

    Gaydadjiev, Georgi; Isaza, Sebastian; Ramírez Bellido, Alejandro; Cabarcas, Felipe; Juurlink, Ben; Álvarez Mesa, Mauricio; Sánchez Castaño, Friman; Azevedo, Arnaldo; Meenderinck, Cor; Ciobanu, Catalin (2010-10)
    Accés obert
    The SARC architecture is composed of multiple processor types and a set of user-managed direct memory access (DMA) engines that let the runtime scheduler overlap data transfer and computation. The runtime system automatically ...